Polymorphisms in the human MHC class III region
Contact txie@systemsbiology.org for questions.
Alignments were done using AVID tool, and PDF files were generated by VISTA.
| First Haplotype (Cell line PGF from Sanger Center) |
| CONTIG | CLONE | ACCESSION |
| 501ctg2 | bPG16N22 | AL663061 |
| 501ctg2 | bPG296P20 | AL662801 |
| 501ctg2 | bPG32J3 | AL662899 |
| 501ctg2 | bPG254B15 | AL671762 |
| 501ctg2 | bPG116M5 | AL645922 |
| 501ctg2 | bPG15K13 | AL772248 |
| 501ctg2 | bPG300A18 | AL662884 |
| 501ctg2 | bPG7F7 | AL772153 |
| AVID alignment (15MB) VISTA (PDF) 787 SNPs (comparing to the consensus in our paper) |
| Second Haplotype (Cell line COX from Sanger Center) |
| 502ctg1 | bCX270M2 | AL662847 |
| 502ctg1 | bCX88C14 | AL670886 |
| 502ctg1 | bCX40G17 | AL662834 |
| 502ctg1 | bCX116I9 | AL662849 |
| 502ctg1 | bCX105D18 | AL662828 |
| 502ctg1 | bCX173E2 | AL662830 |
| AVID alignment (15MB) VISTA (PDF) 582 SNPs (comparing to the consensus in our paper) |
| Third Haplotype (Only 420 kb, Sequenced by H. Inoko lab in Tokai University) |
| AP000502 |
| AP000503 |
| AP000504 |
| AP000505 |
| AP000506 |
| AVID alignment (8.5MB) VISTA (PDF) 371 SNPs (comparing to the consensus in our paper) |
Last Modified on May 22, 2003
by Tao Xie at Institute for Systems Biology.
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