Institute for Systems Biology
  ISB: Senior Research Scientists: Eric Deutsch
 Eric Deutsch
Eric Deutsch

Susan Lindquest

- PeptideAtlas - A resource for proteomics mass spectrometry
- MRMAtlas - A resource for designing transitions for targeted proteomics via MRM
- mzML - Mass Spectrometry Markup Language
- TraML - Transitions Markup Language
- SBEAMS - Systems Biology Experiment Analysis Management System
- MISFISHIE - Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments

- Senior Research Scientist at the Institute for Systems Biology
- Co-chair of the HUPO Proteomics Standards Initiative (PSI)
- Chair of the HUPO PSI Mass Spectrometry Standards Working Group
- Advisory Board member of the Functional Genomics Data (FGED) Society
- Associate Editor of BMC Genomics
- Editorial Board member of Molecular and Cellular Proteomics
- Member of the US HUPO Sub-committee on Biostatistics
- Member of the ABRF Proteome Informatics Research Group (iPRG)
- Member of the Ontology for Biomedical Investigations (OBI) Coordinating Committee
- Member of the Human Proteome Organization (HUPO) Human Proteome Project (HPP) Working Group
- Member of the Human Proteome Organization (HUPO) New Technology and Resources Committee

Selected Recent Publications
Deutsch, E. W., Lam H., Aebersold R., PeptideAtlas: A Resource for Target Selection for Emerging Targeted Proteomics Workflows, 2008, EMBO Reports, 9, 429 [ Abstract | Free Full Access PDF ]

Deutsch, E. W., Lam, H., Aebersold R., Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics, 2008, Physiological Genomics, 33, 18 [ Abstract | Free Full Access ]

Deutsch, E. W., Ball, C. A., Berman, J. J., Bova, G.S., Brazma, A., Bumgarner, R. E., Campbell, D. A., Causton, H. C., Christiansen, J., Davidson, D., et al., Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE), 2008, Nature Biotechnology, 26, 305 [ Abstract | PDF ]

Brunner, E., Ahrens, C. H., Mohanty, S., Baetschmann, H., Loevenich, S., Potthast, F., Deutsch, E. W., deLichtenberg, U., Rinner, O., Lee, H., et al., A high-quality map of the Drosophila melanogaster proteome, 2007, Nature Biotechnology, 25, 576-583

Lam H., Deutsch, E. W., Eddes J.S., Eng J.K., King N., Stein S.E., Aebersold R., Development and validation of a spectral library searching method for peptide identification from MS/MS, 2007, Proteomics, 7(5), 655-667

complete list...

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