Halobacterium salinarum NRC-1 Environmental and Gene Regulatory Influence Network (EGRIN)
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EGRIN enables searching a database of gene/condition biclusters in the organism
Halobacterium sp. NRC-1 .
A bicluster is a set of genes whose expression behaves coherently under a set of conditions.
For each bicluster, EGRIN displays a list of genes and regulators, a regulatory circuit diagram, and
a PDF containing supporting information for clustering.
Clusters were identified by the
cMonkey algorithm
and regulatory circuits were computed by
Inferelator .
Circuit diagrams created by BioTapestry .
Using the VNG naming
system, search for genes that belong to or regulate biclusters. Regulators may be
genes or environmental factors (for example: oxygen, illumination, gamma, cu, fe...).
In addition, searching all fields will also search based on functional
annotations, motif sequence (exact match only), or cluster ID.
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Go directly to the selected bicluster
Cu
Fe
gamma
illumination
Mn
Ni
oxygen
uv
VNG0019H
VNG0040C
VNG0066H
VNG0101G
VNG0147C
VNG0156C
VNG0160G
VNG0176H
VNG0194H
VNG0254G
VNG0293H
VNG0315G
VNG0320H
VNG0374G
VNG0389C
VNG0424C
VNG0451G
VNG0458G
VNG0462C
VNG0471C
VNG0511H
VNG0530G
VNG0536G
VNG0651G
VNG0703H
VNG0734G
VNG0751C
VNG0826C
VNG0835G
VNG0890G
VNG0996G
VNG1029C
VNG1123G
VNG1215G
VNG1377G
VNG1405C
VNG1406G
VNG1464G
VNG1483C
VNG1488G
VNG1490H
VNG1496G
VNG1776G
VNG1816G
VNG1836G
VNG1845C
VNG1899G
VNG1922G
VNG2020C
VNG2094G
VNG2126C
VNG2163H
VNG2243G
VNG2441G
VNG2476C
VNG2614H
VNG2641H
VNG2661G
VNG5009H
VNG5028G
VNG5050H
VNG5068G
VNG5075C
VNG5130H
VNG5142G
VNG5144H
VNG5163G
VNG5176C
VNG5182G
VNG6239G
VNG6288C
Zn
Display Regulator centered network
Examples:
Try searching for these genes:
VNG2664G VNG1001G VNG0665G VNG1768G VNG2658G VNG2665G VNG2668G
Or these regulators:
VNG0040C VNG0320H VNG1029C VNG1836G VNG1899G VNG2243G
Or these:
Oxygen illumination VNG1845C VNG1103G VNG1104G VNG1105G VNG1702G VNG1705G VNG1707G
Synonyms work, too:
blp bat brp bop clc