EGRIN enables searching a database of gene/condition biclusters in the organism
Halobacterium sp. NRC-1.
A bicluster is a set of genes whose expression behaves coherently under a set of conditions.
For each bicluster, EGRIN displays a list of genes and regulators, a regulatory circuit diagram, and
a PDF containing supporting information for clustering.
Clusters were identified by the
cMonkey algorithm
and regulatory circuits were computed by
Inferelator.
Circuit diagrams created by BioTapestry.
Using the VNG naming
system, search for genes that belong to or regulate biclusters. Regulators may be
genes or environmental factors (for example: oxygen, illumination, gamma, cu, fe...).
In addition, searching all fields will also search based on functional
annotations, motif sequence (exact match only), or cluster ID.