Baliga Lab at ISB
Halobacterium salinarum NRC-1
Environmental and Gene Regulatory Influence Network (EGRIN)

You are viewing EGRINOS (2010, Kaur, Baliga, et al)

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search by: member genes, regulators, all fields.

EGRIN enables searching a database of gene/condition biclusters in the organism Halobacterium sp. NRC-1. A bicluster is a set of genes whose expression behaves coherently under a set of conditions. For each bicluster, EGRIN displays a list of genes and regulators, a regulatory circuit diagram, and a PDF containing supporting information for clustering.

Clusters were identified by the cMonkey algorithm and regulatory circuits were computed by Inferelator. Circuit diagrams created by BioTapestry.

Using the VNG naming system, search for genes that belong to or regulate biclusters. Regulators may be genes or environmental factors (for example: oxygen, illumination, gamma, cu, fe...). In addition, searching all fields will also search based on functional annotations, motif sequence (exact match only), or cluster ID.

Go directly to the selected bicluster

Display Regulator centered network

Examples:

Try searching for these genes:

VNG2664G VNG0665G VNG1768G VNG2658G

Or these regulators:

TFGROUP1 VNG0040C VNG0320H VNG1029C VNG1836G VNG1899G VNG2243G

Or these:

paraquat H2O2 VNG1845C VNG1103G VNG1104G VNG1105G VNG1702G VNG1705G VNG1707G

Synonyms work, too:

blp bat