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ISB Data and Software
Making data and software freely available to the community is critical for
the advancement of research. The Institute for Systems Biology is
committed to distributing data and software to the public as soon as it is
validated. Research results are being made available in a variety of
ways: some projects only have raw data downloads; others include a user
interface to explore the data without having to download it all.
This site is still under construction. Below are a few projects and
interfaces that we have set up to export thus far. More will be coming
soon. The Brain Expression Database will become available in early
May. Projects not ready to export are only available on the intranet.
Software
Database Interfaces (External Access)
Data Download
- Supporting data from T. Ideker, V. Thorsson, A. F. Siegel, and L. Hood. Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data Journal of Computational Biology 7 (6) 805-817 (2001).
- Stem Cells Data: Web supplement for the paper "Differential Gene Expression Profiling of Adult Murine Hematopoietic Stem Cells"
Project Descriptions (External Access)
- SBEAMS (Systems Biology Experiment Analysis Management System)
- BIOSAP (Blast Integrated Oligonucleotide Selection Accelerator Package)
- MAGE-OM/ML (MicroArray Gene Expression - Object Model / Markup Language)
- VERA and SAM: Finding significant expression differences in DNA microarray data
- MHC Human Mouse: Comparative Genome Sequence analysis of the Human and Mouse MHC Class III Region
- Stem Cells Data: Web supplement for the paper "Differential Gene Expression Profiling of Adult Murine Hematopoietic Stem Cells"
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